Just looking into this mod, interesting so far, not as quirky as pirates. Are the bikini babe posters default? I can't remember those in the original game.
Found two issues, though I only thought to get a save for one. First is some stairs you can climb up, but not down, treats the area above the stairs as normal floor, got the save for that. Second was a general enemy fenced off from your agents, shotgun took care of the fence. Scatter from shotguns is a little insane, killed an agent directly behind the guy on one attempt.
Edit
was messing with the new battles part of the main menu, looking at the ufopedia, I get a crash on the chemtrails transfer site, hybrid storage facility, and hybrid operations. Haven't had time to check the whole topic, so I don't know if those have been mentioned.
Incidentally, what is the CAFE? I was in there to see what it was.